pathfindR-package	pathfindR
.find_components_named	dot-find_components_named
.find_subnetworks	dot-find_subnetworks
.ga_compare	dot-ga_compare
.ga_crossover_mutation	dot-ga_crossover_mutation
.ga_make_individual	dot-ga_make_individual
.ga_pick	dot-ga_pick
.ga_score	dot-ga_score
.ga_sort_desc	dot-ga_sort_desc
.genetic_algorithm	dot-genetic_algorithm
.greedy_search	dot-greedy_search
.make_subnetwork	dot-make_subnetwork
.parse_experiment	dot-parse_experiment
.score_subnetwork	dot-score_subnetwork
.simulated_annealing	dot-simulated_annealing
.sort_subnetworks_desc	dot-sort_subnetworks_desc
active_snw_enrichment_wrapper	active_snw_enrichment_wrapper
active_subnetwork_search	active_subnetwork_search
annotate_term_genes	annotate_term_genes
build_network	build_network
build_score_context	build_score_context
cluster_enriched_terms	cluster_enriched_terms
cluster_graph_vis	cluster_graph_vis
color_kegg_pathway	color_kegg_pathway
combined_results_graph	combined_results_graph
combine_pathfindR_results	combine_pathfindR_results
create_HTML_report	create_HTML_report
create_kappa_matrix	create_kappa_matrix
create_term_gene_graph	create_term_gene_graph
create_term_gene_plot	create_term_gene_plot
enrichment	enrichment
enrichment_analyses	enrichment_analyses
enrichment_chart	enrichment_chart
example_unfiltered_snws	example_unfiltered_snws
fetch_gene_sets	fetch_gene_sets
filter_active_subnetworks	filter_active_subnetworks
fuzzy_term_clustering	fuzzy_term_clustering
get_active_subnetworks	get_active_subnetworks
get_biogrid_pin	get_biogrid_pin
get_gene_sets_list	get_gene_sets_list
get_kegg_gsets	get_kegg_gsets
get_mgsigdb_gsets	get_mgsigdb_gsets
get_pin_file	get_pin_file
get_reactome_gsets	get_reactome_gsets
gset_list_from_gmt	gset_list_from_gmt
hierarchical_term_clustering	hierarchical_term_clustering
hyperg_test	hyperg_test
input_processing	input_processing
input_testing	input_testing
isColor	isColor
order_df_by_columnn	order_df_by_columnn
pathfindR	pathfindR
plot_scores	plot_scores
process_pin	process_pin
return_pin_path	return_pin_path
run_pathfindR	run_pathfindR
safe_get_content	safe_get_content
score_terms	score_terms
single_iter_wrapper	single_iter_wrapper
summarize_enrichment_results	summarize_enrichment_results
term_gene_heatmap	term_gene_heatmap
UpSet_plot	UpSet_plot
visualize_active_subnetworks	visualize_active_subnetworks
visualize_KEGG_diagram	visualize_KEGG_diagram
visualize_terms	visualize_terms
visualize_term_interactions	visualize_term_interactions
