amph_trem               amph_trem dataset
assoc_mat               Create an host-symbiont association matrix
geo_D                   Geodesic distance between trees
gini_RSV                The Gini coefficient adjusted for negative
                        attributes (Raffinetti, Siletti, & Vernizzi,
                        2015)
gini_ci                 Plot the confidence intervals of Gini
                        coefficient
link_freq               Frequency of host-symbiont association
linkf_CI                Confidence intervals for the frequency of
                        host-symbiont association
max_cong                Algortihm for maximizing congruence between two
                        phylogenies
max_incong              Algortihm for maximizing incongruence between
                        two phylogenies
nuc_cp                  Nuclear and chloroplast dataset of orchids
one2one_f               Maximum number of unique one-to-one association
                        over a number of runs
paco_ss                 Procrustes Approach to Cophylogeny (PACo) of
                        the host and symbiont configurations
paraF                   Test of host-symbiont coevolution
prob_statistic          Frequencies of the associations for the
                        posterior probability trees
tangle_gram             Tanglegram of the host-symbiont frequencies
trimHS_maxC             Trims the H-S association matrix maximizing the
                        congruence
trimHS_maxI             Trims the H-S association matrix maximizing the
                        incongruence
