* using log directory 'd:/Rcompile/CRANpkg/local/4.7/mcdabench.Rcheck' * using R Under development (unstable) (2026-05-28 r90085 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * current time: 2026-05-29 16:15:37 UTC * checking for file 'mcdabench/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'mcdabench' version '1.1.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'mcdabench' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s] OK * checking whether the package can be loaded with stated dependencies ... [2s] OK * checking whether the package can be unloaded cleanly ... [2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [2s] OK * checking whether startup messages can be suppressed ... [2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [15s] OK * checking Rd files ... [2s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [20s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [29s] ERROR Error(s) in re-building vignettes: --- re-building 'mcdacomp.Rmd' using rmarkdown Quitting from mcdacomp.Rmd:284-293 [unnamed-chunk-15] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `if (p < 0.99999) ...`: ! missing value where TRUE/FALSE needed --- Backtrace: ▆ 1. └─mcdabench::rankcompare(...) 2. └─mcdabench::rankwilcox(rankmat, alpha = alpha, padjmethod = padjmethod) 3. ├─stats::wilcox.test(group1, group2, paired = TRUE, exact = FALSE) 4. └─stats:::wilcox.test.default(group1, group2, paired = TRUE, exact = FALSE) 5. └─stats:::.wilcox_test_one_pval_asymp(STAT, n, alternative, correct) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'mcdacomp.Rmd' failed with diagnostics: missing value where TRUE/FALSE needed --- failed re-building 'mcdacomp.Rmd' --- re-building 'megan.Rmd' using rmarkdown --- finished re-building 'megan.Rmd' --- re-building 'sensana.Rmd' using rmarkdown Quitting from sensana.Rmd:141-145 [unnamed-chunk-11] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `if (p < 0.99999) ...`: ! missing value where TRUE/FALSE needed --- Backtrace: ▆ 1. └─mcdabench::rankcompare(...) 2. └─mcdabench::rankwilcox(rankmat, alpha = alpha, padjmethod = padjmethod) 3. ├─stats::wilcox.test(group1, group2, paired = TRUE, exact = FALSE) 4. └─stats:::wilcox.test.default(group1, group2, paired = TRUE, exact = FALSE) 5. └─stats:::.wilcox_test_one_pval_asymp(STAT, n, alternative, correct) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'sensana.Rmd' failed with diagnostics: missing value where TRUE/FALSE needed --- failed re-building 'sensana.Rmd' SUMMARY: processing the following files failed: 'mcdacomp.Rmd' 'sensana.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [24s] OK * checking HTML version of manual ... [22s] OK * DONE Status: 1 ERROR