* using log directory 'd:/Rcompile/CRANpkg/local/4.5/tepr.Rcheck'
* using R version 4.5.3 (2026-03-11 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'tepr/DESCRIPTION' ... OK
* this is package 'tepr' version '1.1.15'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'tepr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [18s] OK
* checking whether the package can be loaded with stated dependencies ... [18s] OK
* checking whether the package can be unloaded cleanly ... [19s] OK
* checking whether the namespace can be loaded with stated dependencies ... [18s] OK
* checking whether the namespace can be unloaded cleanly ... [20s] OK
* checking loading without being on the library search path ... [19s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [47s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [59s] ERROR
Running examples in 'tepr-Ex.R' failed
The error most likely occurred in:

> ### Name: retrievechrom
> ### Title: Retrieve chromosome lengths and information for a specified
> ###   genome.
> ### Aliases: retrievechrom
> 
> ### ** Examples
> 
> # This example requires an internet connection to the UCSC database
> hg19_chroms <- retrievechrom(genomename = "hg19", verbose = TRUE)
Retrieving chromosome lengths
Error in retrievechrom(genomename = "hg19", verbose = TRUE) : 
[tepr] Error: Genome not found.
  'hg19' not found via SeqinfoForUCSCGenome.
  Check spelling or UCSC availability.
  Alternatively, provide 'chromtab' directly.
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [64s] ERROR
  Running 'testthat.R' [63s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(tepr)
  > 
  > test_check("tepr")
  Saving _problems/test-preprocessing-blacklisthighmap-10.R
  Saving _problems/test-preprocessing-createtablescores-11.R
  Saving _problems/test-preprocessing-24.R
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 28 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-preprocessing-blacklisthighmap.R:10:1'): (code run outside of `test_that()`) ──
  Error in `retrievechrom(genomename, verbose = FALSE, filterchrom = FALSE)`: 
  [tepr] Error: Genome not found.
    'hg38' not found via SeqinfoForUCSCGenome.
    Check spelling or UCSC availability.
    Alternatively, provide 'chromtab' directly.
  
  Backtrace:
      ▆
   1. └─tepr::retrievechrom(genomename, verbose = FALSE, filterchrom = FALSE) at test-preprocessing-blacklisthighmap.R:10:1
  ── Error ('test-preprocessing-createtablescores.R:11:1'): (code run outside of `test_that()`) ──
  Error in `retrievechrom(genomename, verbose = FALSE)`: 
  [tepr] Error: Genome not found.
    'hg38' not found via SeqinfoForUCSCGenome.
    Check spelling or UCSC availability.
    Alternatively, provide 'chromtab' directly.
  
  Backtrace:
      ▆
   1. └─tepr::retrievechrom(genomename, verbose = FALSE) at test-preprocessing-createtablescores.R:11:1
  ── Error ('test-preprocessing.R:23:1'): (code run outside of `test_that()`) ────
  Error in `retrievechrom(genomename, verbose)`: 
  [tepr] Error: Genome not found.
    'hg38' not found via SeqinfoForUCSCGenome.
    Check spelling or UCSC availability.
    Alternatively, provide 'chromtab' directly.
  
  Backtrace:
      ▆
   1. └─tepr::preprocessing(...) at test-preprocessing.R:23:1
   2.   └─tepr:::.createbedgraphlistwmean(...)
   3.     └─tepr::blacklisthighmap(...)
   4.       └─tepr::retrievechrom(genomename, verbose)
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 28 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [50s] OK
* checking PDF version of manual ... [17s] OK
* checking HTML version of manual ... [6s] OK
* DONE
Status: 2 ERRORs