Package: dpcR
Type: Package
Title: Digital PCR Analysis
Version: 0.6
LazyData: true
Date: 2025-06-12
Authors@R: c(
    person("Michal", "Burdukiewicz", email = "michalburdukiewicz@gmail.com", 
           role = c("aut"), comment = c(ORCID = "0000-0001-8926-582X")),
    person("Stefan", "Roediger", email = "stefan.roedigier@b-tu.de", role = "aut",
           comment = c(ORCID = "0000-0002-1441-6512")),
    person("Bart", "Jacobs", email = "BartKM.Jacobs@ugent.be", role = "aut"),
    person("Piotr", "Sobczyk", email = "pj.sobczyk@gmail.com", role = "ctb"),
    person("Andrej-Nikolai", "Spiess", email = "draspiess@gmail.com", role = c("cre", "ctb")))
Description: Analysis, visualisation and simulation of digital polymerase chain
    reaction (dPCR) (Burdukiewicz et al. (2016) <doi:10.1016/j.bdq.2016.06.004>). 
    Supports data formats of commercial systems (Bio-Rad QX100 and
    QX200; Fluidigm BioMark) and other systems.
License: GPL-3
URL: https://github.com/michbur/dpcR
BugReports: https://github.com/michbur/dpcR/issues
Depends: R (>= 3.0.0), methods
Imports: binom, chipPCR, e1071, evd, dgof, multcomp, qpcR, pracma,
        rateratio.test, readxl, signal, shiny, spatstat.explore,
        spatstat.geom
Suggests: digest, DT, ggplot2, knitr, markdown, rhandsontable,
        rmarkdown, shinythemes, xtable
VignetteBuilder: knitr
Packaged: 2025-06-17 04:13:43 UTC; User
NeedsCompilation: no
Repository: CRAN
Encoding: UTF-8
RoxygenNote: 6.1.1
Collate: 'AUCtest.R' 'BioradCNV.R' 'White.R' 'adpcr2panel.R'
        'adpcr2ppp.R' 'binarize.R' 'classes.R' 'bind_dpcr.R' 'bioamp.R'
        'calc_breaks.R' 'calc_coordinates.R' 'calc_lambda.R'
        'compare_dens.R' 'count_test-class.R' 'create_dpcr.R'
        'dPCRmethyl.R' 'ddpcRquant.R' 'df2dpcr.R' 'dpcR-package.R'
        'dpcReport_gui.R' 'dpcr2df.R' 'dpcr_calculator.R'
        'dpcr_density.R' 'dpcr_density_gui.R' 'dpcr_density_table.R'
        'extract_run.R' 'fit_adpcr.R' 'fl.R' 'get_k_n.R' 'hsm.R'
        'limit_cq.R' 'many_peaks.R' 'modlist.R' 'moments.R' 'num2int.R'
        'pds.R' 'pds_raw.R' 'plot_distr.R' 'plot_panel.R'
        'plot_vf_circ.R' 'plot_vic_fam.R' 'print_summary.R' 'qdpcr.R'
        'qpcr2pp.R' 'qpcr_analyser.R' 'read_amp.R' 'read_dpcr.R'
        'rename_dpcr.R' 'rtadpcr.R' 'safe_efficiency.R' 'show_dpcr.R'
        'sim_adpcr.R' 'sim_ddpcr_bkm.R' 'sim_dpcr.R' 'simulations.R'
        'six_panels.R' 'summary_dpcr.R' 'test_counts.R'
        'test_counts_gui.R' 'test_panel.R' 'test_peaks.R'
        'test_pooled.R' 'valid_amp.R' 'y_val_conf.R'
Date/Publication: 2025-06-18 08:40:30 UTC
Author: Michal Burdukiewicz [aut] (ORCID:
    <https://orcid.org/0000-0001-8926-582X>),
  Stefan Roediger [aut] (ORCID: <https://orcid.org/0000-0002-1441-6512>),
  Bart Jacobs [aut],
  Piotr Sobczyk [ctb],
  Andrej-Nikolai Spiess [cre, ctb]
Maintainer: Andrej-Nikolai Spiess <draspiess@gmail.com>
Built: R 4.5.3; ; 2026-06-11 20:31:24 UTC; windows
