Package: ppgm
Type: Package
Title: PaleoPhyloGeographic Modeling of Climate Niches and Species
        Distributions
Version: 1.1
Authors@R: c(person("A. Michelle","Lawing", role = c("aut","cph"), email = "alawing@tamu.edu"), person("Alexandra", "Howard", role = c("aut","cre"), email = "alexandra.howard@ag.tamu.edu"), person("Maria-Aleja", "Hurtado-Materon", role = "aut"))
Description: Reconstruction of paleoclimate niches using phylogenetic comparative 
    methods and projection reconstructed niches onto paleoclimate maps.
    The user can specify various models of trait evolution or estimate the best fit
    model, include fossils, use one or multiple phylogenies for inference, and make
    animations of shifting suitable habitat through time. This model was first used
    in Lawing and Polly (2011), and further implemented in Lawing et al (2016) and 
    Rivera et al (2020).
    Lawing and Polly (2011) <doi:10.1371/journal.pone.0028554> "Pleistocene climate,
    phylogeny and climate envelope models: An integrative approach to better 
    understand species' response to climate change"
    Lawing et al (2016) <doi:10.1086/687202> "Including fossils in phylogenetic 
    climate reconstructions: A deep time perspective on the climatic niche evolution
    and diversification of spiny lizards (Sceloporus)"
    Rivera et al (2020) <doi:10.1111/jbi.13915> "Reconstructing historical shifts 
    in suitable habitat of Sceloporus lineages using phylogenetic niche modelling.".
Imports: ape, fields, geiger, gifski, methods, phangorn, phytools,
        stringi, parallel, doParallel, foreach
Depends: R (>= 4.4.0), R (>= 2.10), sp, sf
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.3.2
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
Config/testthat/edition: 3
Config/testthat/parallel: true
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-03-12 15:53:39 UTC; alexandra.howard
Author: A. Michelle Lawing [aut, cph],
  Alexandra Howard [aut, cre],
  Maria-Aleja Hurtado-Materon [aut]
Maintainer: Alexandra Howard <alexandra.howard@ag.tamu.edu>
Repository: CRAN
Date/Publication: 2025-03-12 16:20:02 UTC
Built: R 4.5.3; ; 2026-05-28 11:41:20 UTC; windows
