# Health Geography Toolbox for Model-Based Analysis of Infections Panel Data

## Documentation for package ‘swash’ version 2.0.1

- DESCRIPTION file.
- Package NEWS.

## Help Pages

A B C D E G H I L M N O P Q R S T

swash-package | swash: Health Geography Toolbox for Model-Based Analysis of Infections Panel Data

## -- A --

as_balanced | Correction of Non-balanced Panel Dataset with Regional Infection Data

## -- B --

binary_metrics | Fit metrics of observed and expected binary variables
binary_metrics_glm | Fit metrics for binary logit model
breaksgrowth-class | Class '"breaksgrowth"'
breaks_growth | Time Series Model with Breakpoints

## -- C --

C19dNUTSdata | Regional cumulative COVID-19 deaths
calculate_cum | Cumulative Infection Numbers
calculate_cum-method | Methods for Function 'calculate_cum'
calculate_cum-methods | Methods for Function 'calculate_cum'
calculate_incidence | Incidence from Infection Numbers
calculate_incidence-method | Methods for Function 'calculate_incidence'
calculate_incidence-methods | Methods for Function 'calculate_incidence'
calculate_rollmean | Rolling Means of Infection Numbers
calculate_rollmean-method | Methods for Function 'calculate_rollmean'
calculate_rollmean-methods | Methods for Function 'calculate_rollmean'
calculate_rollsum | Rolling Sums of Infection Numbers
calculate_rollsum-method | Methods for Function 'calculate_rollsum'
calculate_rollsum-methods | Methods for Function 'calculate_rollsum'
calculate_Rt | Effective Reproduction Number
calculate_Rt-method | Methods for Function 'calculate_Rt'
calculate_Rt-methods | Methods for Function 'calculate_Rt'
compare_countries | Two-country Comparison of Swash-Backwash Model Parameters
confint-method | Class '"sbm"'
confint-methods | Methods for Function 'confint'
countries-class | Class '"countries"'
COVID19Cases_geoRegion | Switzerland Daily COVID-19 cases by region

## -- D --

did_fatalities_splm_coef | Results from a Difference-in-Differences Model

## -- E --

expgrowth-class | Class '"expgrowth"'
exponential_growth | Exponential Growth Model for Epidemic Data

## -- G --

growth | Logistic Growth Models for Regional Infections
growth-method | Methods for Function 'growth'
growth-methods | Methods for Function 'growth'
growthmodels-class | Class '"growthmodels"'
growth_breaks | Time Series Model with Breakpoints for Regional Infections
growth_breaks-method | Methods for Function 'growth_breaks'
growth_breaks-methods | Methods for Function 'growth_breaks'
growth_hawkes | Hawkes Processs models for Regional Infections
growth_hawkes-method | Methods for Function 'growth_hawkes'
growth_hawkes-methods | Methods for Function 'growth_hawkes'
growth_initial | Exponential Growth Models for Regional Infections
growth_initial-method | Methods for Function 'growth_initial'
growth_initial-methods | Methods for Function 'growth_initial'

## -- H --

hawkes-class | Class '"hawkes"'
hawkes_growth | Hawkes Process Model for Epidemic Data
hist_ci | Creating Histograms with Confidence Intervals

## -- I --

Infections | Infections
infpan-class | Class '"infpan"'
is_balanced | Test whether Panel Dataset with Regional Infection Data is Balanced

## -- L --

load_infections_paneldata | Import of infections panel data
loggrowth-class | Class '"loggrowth"'
logistic_growth | Logistic Growth Model for Epidemic Data

## -- M --

metrics | Fit metrics of observed and expected numeric variables

## -- N --

nbmatrix | Construct Neighbourhood Matrix from Polygons
nbstat | Calculate Neighbourhood Statistics from Polygons

## -- O --

Oesterreich_Faelle | Austria Daily COVID-19 cases by region 2020-02-26 to 2020-05-31

## -- P --

plot | Methods for Function 'plot'
plot-method | Class '"breaksgrowth"'
plot-method | Class '"countries"'
plot-method | Class '"hawkes"'
plot-method | Class '"infpan"'
plot-method | Class '"loggrowth"'
plot-method | Methods for Function 'plot'
plot-method | Class '"sbm"'
plot-method | Class '"sbm_ci"'
plot_coef_ci | Plot Point Estimates With Confidence Intervals
print-method | Class '"breaksgrowth"'
print-method | Class '"countries"'
print-method | Class '"expgrowth"'
print-method | Class '"growthmodels"'
print-method | Class '"hawkes"'
print-method | Class '"infpan"'
print-method | Class '"loggrowth"'
print-method | Class '"sbm"'
print-method | Class '"sbm_ci"'
print-methods | Methods for Function 'print'

## -- Q --

quantile_ci | Computing Quantiles for a given Numeric Vector

## -- R --

RKI_Corona_counties | German Counties with COVID-19 Cases
R_t | Effective Reproduction Number for Epidemic Data

## -- S --

sbm-class | Class '"sbm"'
sbm_ci-class | Class '"sbm_ci"'
show-method | Class '"breaksgrowth"'
show-method | Class '"countries"'
show-method | Class '"expgrowth"'
show-method | Class '"growthmodels"'
show-method | Class '"hawkes"'
show-method | Class '"infpan"'
show-method | Class '"loggrowth"'
show-method | Class '"sbm"'
show-method | Class '"sbm_ci"'
show-methods | Methods for Function 'show'
summary-method | Class '"breaksgrowth"'
summary-method | Class '"countries"'
summary-method | Class '"expgrowth"'
summary-method | Class '"growthmodels"'
summary-method | Class '"hawkes"'
summary-method | Class '"infpan"'
summary-method | Class '"loggrowth"'
summary-method | Class '"sbm"'
summary-method | Class '"sbm_ci"'
summary-methods | Methods for Function 'summary'
swash | Swash-Backwash Model for the Single Epidemic Wave
swash-method | Class '"infpan"'
swash-method | Methods for Function 'swash'
swash-methods | Methods for Function 'swash'
swash_backwash | Swash-Backwash Model for the Single Epidemic Wave

## -- T --

timestamps | Show timestamps
timestamps-method | Show timestamps